Spatial Transcriptomics of a Giant Pilomatricoma

    August 2023 in “ Journal of cutaneous pathology
    Apoorva Patil, Daniel Bennett, Jin Xu, Paul Weisman, Daniel R. Matson
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    TLDR The analysis of a large pilomatricoma revealed five distinct areas with different gene activity related to hair growth and tumor development.
    This study applied 10X Genomics Visium Spatial Gene Expression analysis to a giant pilomatricoma (PM) from a 67-year-old man, revealing five distinct transcriptomic clusters. Four clusters represented the tumor, showing a maturation pattern from basaloid cells to keratinized layers, while one cluster was benign stroma. Unique gene sets were identified in each cluster, with Cluster 1 enriched in DNA replication and cell division processes, Cluster 2 in cell adhesion and skin barrier formation, and Cluster 4 in keratinization and hair cycle processes. The study highlights the potential of spatial transcriptomics in understanding PM pathobiology but notes limitations such as the need for protein-level validation and analysis of additional samples.
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