Testing the Impact of Trait Prevalence Priors in Bayesian-Based Genetic Prediction Modeling of Human Appearance Traits

    Maria‐Alexandra Katsara, Wojciech Branicki, Ewelina Pośpiech, Pirro G. Hysi, Susan Walsh, Manfred Kayser, Michael Nothnagel
    TLDR Using trait prevalence priors in genetic prediction models for appearance traits is currently impractical due to limited knowledge and potential accuracy issues.
    The study investigated the impact of using trait prevalence-informed priors in Bayesian models for predicting human appearance traits such as eye, hair, and skin color, as well as hair structure and freckles. It found that while these priors could potentially improve prediction accuracy, their effectiveness varied across different traits and categories. Importantly, incorrect specification of these priors often reduced accuracy compared to models without priors. The study highlighted the challenge posed by the limited knowledge of spatial prevalence for appearance traits, making the use of prevalence-informed priors in genetic prediction models currently impractical.
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